FULL PEER-REVIEWED JOURNAL PAPERS (names with * are students or postdocs in the lab)
(113) *Cao J, Chen Y, *Chang J H, Chen X J. An evaluation of an inshore bottom trawl survey design for American lobster (Homarus americanus) using computer simulations. Marine and Freshwater Research (Submitted). (112) *Zhang, Y., Y. Chen, *J. Zhu, *S. Tian, and X. Chen. 2012. Evaluating harvest control rules for bigeye tuna (Thunnus obesus) and yellowfin tuna (Thunnus albacares) fisheries in the Indian Ocean. Fisheries Research (in press). (111) *Zhang, Y., *Y. Li, and Y. Chen. 2012. Modeling the dynamics of ecosystem for the American lobster in the Gulf of Maine. Aquatic Ecology (in press). (110) *Wang, X., L. Xu, Y. Chen, G. Zhu, S. Tian, and J. Zhu. 2012. Impacts of fish aggregation devices on size structures of skipjack tuna Katsuwonus pelamis. Aquatic Ecology 46 : 343-352. (109) Gong, C., X. Chen, F. Gao, Y. Chen. 2012. Importance of Weighting for Multi-Variable Habitat Suitability Index Model: A Case Study of Winter-Spring Cohort of Ommastrephes bartramii in the Northwestern Pacific Ocean. Journal of Ocean University of China DOI: 10.1007/s11802-012-1898-6. (108) *Cao, J, X. Chen, and Y. Chen. 2012. Bayesian hierarchical DeLury model for stock assessment of west winter-spring cohort of neon flying squid (Ommastrephes bartramii) in the Northwest Pacific Ocean. Fishery Bulletin (in press) (107) Chen, X., H. Lu, *B. Liu, Y. Chen, G. Li, Z. Fang, and S. Tian. 2012. Age, growth and population structure of Jumbo flying squid, Dosidicus gigas, off the Costa Rica Dome. Journal of the Marine Biological Association of the UK (in press) (106) Chen, X., H. Lu, *B. Liu, Y. Chen, S. Li, and M. Jin. 2012. Species identification of Ommastrephes bartramii, Dosidicus gigas, Sthenoteuthis oualaniensis and Illex argentinus (Ommastrephidae) using beak morphological variables. Scientia Marina (in press) (105) *Moffett, C., Y. Chen, and M. Hunter. 2012. Trap Bycatch in the Gulf of Maine Northern Shrimp Fishery. North American Journal of Fisheries Management (in press) (104) *Zhang, Y. and Y. Chen. 2012. Effectiveness of harvest control rules in managing American lobster (Homarus americanus) fishery in the Gulf of Maine. North American Journal of Fisheries Management (in press) (103) Dai, X., *J. Zhu, X. Chen, L. Xu., Y. Chen. 2012. Biological observations on the crocodile shark Pseudocarcharias kamoharai from the tropical eastern Pacific Ocean. Journal of Fish Biology DOI: 10.1111/j.1095-8649.2011.03177.x (102) *McMahan, M. D. F. Cowan, G. D. Sherwood, J. H. Grabowski, Y. Chen. 2012. Evaluation of coded microwire tag retention in juvenile American lobster, homarus americanus. Journal of Crustacean Biology (in press) (101) *Zhu, J., Y. Chen, X. Dai, S. J. Harley, S. D. Hoyle, and M. N. Maunder, A. M. Aires-da-Silva. 2012. Implications of uncertainty in the spawner-recruitment relationship for fisheries management: an illustration using bigeye tuna (Thunnus obesus) in the eastern Pacific Ocean. Fisheries Research 119– 120: 89– 93 (100) Chen, X., *J. Cao and Y. Chen, B. Liu, and S. Tian. 2012. Effect of Kuroshio Current on spatial distribution of Ommastrephes bartramii in the Northwest Pacific Ocean. Bulletin of Marine Science 88:63-72 (99) *Zhu, J., L. Xu, X. Dai, X. Chen, Y. Chen. 2012. Comparative analysis of depth distribution for seventeen pelagic fish species captured in a longline fishery in the eastern Pacific Ocean. Scientia Marina 76(1): 149-157 doi: 10.3989/scimar.03379.16C (98) *Chang, Y.J., C.L. Sun, Y. Chen, S.Z. Yeh, and G. DiNardo, 2012. Habitat suitability analysis and identification of potential fishing grounds for swordfish, Xiphias gladius, in the South Atlantic Ocean. Int. J. Remote Sens. 33:23, 7523-7541. (97) Chen, X., H. Lu, *B. Liu, Y. Chen. 2011. Sexual dimorphism of statolith growth for Illex argentinus off the Exclusive Economic Zone of Argentinean waters. Bulletin of Marine Science. DOI: http://dx.doi.org/10.5343/bms. 1082. (96) *Ying, Y., Y. Chen, L. Lin, and T. Gao. 2011. Risks of ignoring fish population spatial structure in fâcheries management. Canadian Journal of Fisheries and Aquatic Sciences 68: 2101-2120. (95) *Chang, Y. J, C. L. Sun, Y. Chen, and S. Z. Yeh. 2011. Modelling the growth of crustacean species. Review in Fisheries Biology and Fisheries doi: 10.1007/s11160-011-9228-4. (94) *Liu, Y., Y. Chen, J. Cheng, and J. Lu. 2011. An adaptive sampling method based on optimized sampling design for fishery-independent surveys with comparisons to conventional designs. Fisheries Science 77:467-478, DOI: 10.1007/s12562-011-0355-6 (93) *Cao, J., X. Chen, Y. Chen, *B. Liu, J. Ma, S. Li. 2011. Generalized linear Bayesian models for standardizing CPUE: an application to a squid-jigging fishery in the northwest Pacific Ocean. Scientia Marina 75: 679-689 doi:0.3989/scimar.2011.75n4679 (92) *Liu, B., X. Chen,Y. Chen, H. Lu,W. Qian. 2011. Trace elements in the statoliths of jumbo flying squid off the Exclusive Economic Zones of Chile and Peru. Marine Ecological Progress Series 429:93-101 (91) *Moffett, C., Y. Chen, and M. Hunter. 2011. Evaluating Port Monitoring Programs: a Case Study of the Northern Shrimp Fishery in the Gulf of Maine. Fisheries Research 108 :321-326. (90) Chen, X. S. Tian, *B. Liu, Y. Chen. 2011. Modelling of habitat suitability index for eastern fall cohort of Ommastrephes bartramii in the central North Pacific Ocean. Chinese Journal of Oceanology and Limnology 29:493-504 (89) *Zhang, Y., *D. Brzezinski1,*J. H. Chang, *K. Stepanek, and Y. Chen. 2011.Spatial structuring of fish community in association with environmental variables in the coastal Gulf of Maine Journal of North Atlantic Fisheries Science 43 :47-64 (88) *Zhang, Y., Y. Chen, and *J. Chang. 2011. Estimating biological reference points using individual-based per-recruit models for the Gulf of Maine American lobster, Homarus americanus, fishery. Fisheries Research 108: 385-392. (87) *Zhang, Y., Y. Chen, and *C. Wilson. 2011. Developing and evaluating harvest control rules with different biological reference points for the American lobster fishery in the Gulf of Maine. ICES Journal of Marine Sciences: doi :10.1093/icesjms/fsr071 (86) *Jordaan, A., *J. Crocker, and Y. Chen. 2011. Linkages among physical and biological properties in tidepools on the Maine Coast. Environmental Biology of Fishes doi:10.1007/s10641-011-9812-4. (85) *Chang, J. C-L Sun, Y. Chen, *Y. Zhang, and S-Z Yeh. 2011. Incorporating climate changes into population dynamic modelling: an individual-based modelling approach for lobster. Canadian Journal of Fisheries and Aquatic Sciences 68:122-136. (84) Chen, X., H. Lu, *B. Liu, and Y. Chen. 2011. Age, growth and population structure of jumbo flying squid, Dosidicus gigas, based on statolith microstructure off the EEZ of Chilean waters. Journal of the Marine Biological Association of the UK 91: 229–235. (83) *Zhu, J., X. Dai, and Y. Chen. 2011. Species composition and diversity of pelagic fishes based on a longline fishery in the North Pacific Ocean. Chinese Journal of Oceanology and Limnology : 29 :261-269 DOI:10.1007/s00343-011-0122-7. (82) *Zhu, J. X. Dai, L. Xu, X. Chen and Y. Chen. 2011. Reproductive biology of female blue shark Prionace glauca in the southeastern Pacific Ocean. Environnemental Biology of Fishes 91 :95-102, DOI 10.1007/s10641-010-9763-1. (81) *Chang, J. H., Y. Chen, D. Holland, and J. Grabowski. 2010. Estimating spatial distribution of American lobster Homarus americanus using habitat variables. Marine Ecological Progress Series 420: 145–156. (80) *Liu, B., X. Chen, H. Lu, Y. Chen, and W. Qian. 2010. Fishery biology of the jumbo flying squid Dosidicus gigas off the Exclusive Economic Zone of Chilean waters. Scientia Marina 74:687-695. doi: 10.3989/scimar.2010.74n4687 (79) *Brzezinski, D., J. Wilson and Y. Chen. 2010. Voluntary participation in regional fisheries management council meetings. Ecology and Society 15(3): 2. [online] URL: http://www.ecologyandsociety.org/vol15/iss3/art2/ (78) *Li, Y., *B. Song, Y. Chen, L. Chen, N. Yu, and *D. Olson. 2010. Changes in the trophic interactions and the community structure of Lake Taihu ecosystem from the 1960s to 1990s. Aquatic Ecology (in press) (77) *Jordaan, A.,Y. Chen, D. W. Townsend and S. Sherman. 2010. Identification of ecological structure along an oceanographic gradient within the Gulf of Maine. Canadian Journal of Fisheries and Aquatic Sciences (in press) (76) Chen, X., S. Tian, Y. Chen, and B. Liu. 2010. A modeling approach to identify optimal habitat and suitable fishing grounds for neon flying squid (Ommastrephes bartramii) in the Northwest Pacific Ocean. Fishery Bulletin 108:1-14. (74) *Li, Y., Y. Chen, *D. Olson, N. Yu, and L. Chen. 2009. Evaluating ecosystem structure and functioning of the East China Sea Shelf ecosystem, China. Hydrobiologia 636:331-351. DOI 10.1007/s10750-009-9964-9. (73) *Tian, S., Y. Chen, X. Chen, L. Xu and X. Dai. 2009. Impacts of spatial scales of fisheries a d environmental data on CPUE standardization. Freshwater and Marine Research 60:1273-1284. (70) Cao, J., X. Chen, and Y. Chen. 2009. Influence of surface oceanographic variability on abundance of the western winter-spring stock of neon flying squid (Ommastrephes bartramii) in the northwest Pacific Ocean. Marine Ecological Progress Series 381:119-127. (69) *Tian, S., X. Chen, Y. Chen, and X. Dai. 2009. Standardizing CPUE of Ommastrephes bartramii for Chinese squid-jigging fishery in the Northwest Pacific Ocean. Chinese Journal of Oceanology and Limnology Chinese Journal of Oceanology and Limnology 27: 729-739.DOI: 10.1007/s00343-009-9199-7 (68) Chiang, W.C., C.L. Sun, S.P. Wang, S.Z. Yeh, Y. Chen, W. Su, D.C. Liu, W.Y. Chen. 2009. Sex-specific per recruit analysis of the sailfish, Istiophorus platypterus, in the waters off eastern Taiwan. Fishery Bulletin (in press) (66) *Li, Y., Y. Chen, B. Song, D. Olson, N. Yu, and L. Chen. 2009. Evaluating impacts of fisheries on ecosystem properties and developing optimal management strategies in a lake ecosystem. Fisheries Research 95: 309-324. (56) Hong, M., L. Chen, X. Sun, S. Gu, L. Zhang and Y. Chen. 2007. Metabolic and immune responses in Chinese mitten-handed crab (Eriocheir sinensis) juveniles exposed to elevated ambient ammonia. Comparative Biochemistry and Physiology: Toxicology & Pharmacology 145: 363-369. doi:10.1016/j.cbpc.2007.01.003. (49) * Rajakauna, H., Y. Chen, and P. Snelgrove. 2006. Is retrospective error a “true error”? mathematical basis of adaptive framework for virtual population analysis. Mathematical and Physical Fisheries Science (in press). (47) *Kirshenbaum, S., Feindal, S., and Y. Chen. 2006. A study to evaluate methods of tagging Maine sea cucumber (Cucumaria frondosa). Fishery Bulletin 104:299–302 (30) *Zhao, Y., Y. Chen, and J. A. Brown. 2002. Impacts of egg size and hatching temperature on size, survival and growth of Atlantic cod larvae (Gadus morhua). Proceeding of the 3rd World Fisheries Congress, American Fisheries Society, Bethesda, MD (peer-reviewed) (27) Chen, Y. and Margaret Hunter. 2001. An application of robust Bayesian methods in fisheries stock assessment. Proceedings of the Annual Meeting of the American Statistical Society, Atlanta, George, August 5-9, 2001.
(15) Chen, Y. 1997. A comparison study of age- and length-structured yield-per-recruit models. Fisheries Research 30:43-55.
(9) Chen, Y. and D. A. Jackson. 1995. Robust estimation of mean and variance in fisheries. Transactions of the American Fisheries Society 124:401-412.
(8) Chen, Y. and H. H. Harvey. 1995. Growth, abundance, and food supply of white sucker, Catostomus commersoni. Transactions of the American Fisheries Society 124:262-271.
(7) Chen, Y. and J. E. Paloheimo. 1995. A robust regression analysis of recruitment in fisheries. Canadian Journal of Fisheries and Aquatic Sciences 52: 993-1006.
(6) Chen, Y. and H. H. Harvey. 1994. Maturation of white sucker, Catostomus commersoni, populations in Ontario. Canadian Journal of Fisheries and Aquatic Sciences 51:2066-2076.
(5) Chen, Y. and J. E. Paloheimo. 1994. Estimation of fish length and age at 50% maturity using a logistic type model. Aquatic Sciences 56:206-219.
(3) Chen, Y., D. A. Jackson, and J. E. Paloheimo. 1994. Robust regression approach to analyzing fisheries data. Canadian Journal of Fisheries and Aquatic Sciences 51:1420-1429.
(2) Paloheimo, J. E. and Y. Chen. 1993. Estimation of effective effort from catch-at-age data. Canadian Journal of Fisheries and Aquatic Sciences 50:2421-2428.
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